Intermittent Fasting, Gut Health, and Your Microbiome (2024)

Evidence suggests that intermittent fasting may benefit your gut health and boost your gut microbiome, the trillions of bacteria and other microorganisms that live in your gut.

Intermittent fasting is an approach to eating where you switch between periods of fasting and eating as normal.

There are different types of intermittent fasting, and some may help to increase the diversity of your gut microbiome, as well as your levels of specific gut bacteria.

What you eat when you’re not fasting is also important when it comes to the health of your gut. There are some broad guidelines you can follow, but everyone responds to foods differently.

With the ZOE at-home test, you find out your body’s unique responses to hundreds of foods and discover the range of “good” and “bad” bugs in your gut microbiome.

You can take a free quiz to learn how ZOE can help you eat the best foods for your gut.

Read on to find out more about intermittent fasting and gut health.

What is intermittent fasting?

Intermittent fasting is an eating plan that focuses on when you eat, rather than the specific foods you consume.

There are many different types of intermittent fasting, but with each method, you alternate between periods of eating and not eating — or fasting.

  • Time-restricted eating: This involves fasting during certain hours of the day. It’s the most popular approach, as it extends the fast that happens naturally while you sleep. Different versions of time-restricted eating include 14/10, 16/8, and 20/4. If you follow the 16/8 method, you eat for 8 hours of the day — say, from 9 a.m. to 5 p.m. — and then fast for the other 16 hours, from 5 p.m. to 9 a.m.

  • 5:2 fasting: With this method, you eat your normal diet for 5 days out of the week, then reduce the amount you eat on the other 2 days, usually to no more than 500–800 calories. You can choose which days you fast, as long as there is at least 1 non-fasting day between them.

  • Alternate-day fasting: This is similar to 5:2, but instead of fasting on 2 set days of the week, you alternate between days of eating as normal and days where you reduce your food intake.

Many people turn to intermittent fasting to improve their health. There are a number of possible benefits to the various methods, and recent evidence suggests intermittent fasting may also impact your gut health.

Can intermittent fasting help with gut health?

Research into how intermittent fasting impacts gut health is relatively new, but there’s evidence to suggest that it could help change the makeup of your gut microbiome, which is linked to your overall health.

Intermittent fasting may also improve the function of your gut barrier, the layers of cells that form the lining of your gut, which let nutrients pass through while protecting you from diseases and toxins.

One study involved healthy men observing fasting periods of around 16 hours per day — similar to the 16/8 method — during the Islamic holy month of Ramadan.

At the end of the month, the participants’ gut microbiomes had higher levels of Lachnospiraceae, beneficial bacteria that have been linked with a lower risk of cancer and inflammatory bowel disease, and improved heart health and mental health.

However, after they stopped daily fasting, the men’s gut microbiomes returned to their previous state.

In another study, a group of young men following the 16/8 approach saw a significant increase in their overall microbiome diversity. They also had higher levels of specific beneficial bacteria called Prevotellaceae and Bacteroidetes, which are associated with reduced markers for obesity and better metabolic health.

The natural fasting that happens as you sleep gives clues as to how extended fasting might also help with the health of your gut barrier.

During this time, activity in the gut slows down and the cells in your gut lining are repaired.

Scientists have suggested that lengthening this fasting time could help strengthen the gut barrier and, in turn, limit chronic inflammation, which can contribute to chronic health conditions like heart disease and type 2 diabetes.

Research is ongoing, but it could help explain some of the reported benefits of intermittent fasting.

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What should you eat for gut health during intermittent fasting?

While there are no strict rules about what you can eat during non-fasting periods, if you’re looking to improve your gut health, certain foods may help.

But everyone is different. With the ZOE at-home test, you can find the foods that work best for you and your long-term health goals.

Try fermented foods

Probiotics are bacteria similar to those found in your gut microbiome, and scientists believe they have health benefits.

You can get probiotics from fermented foods such as live yogurt, aged cheeses, kefir, kimchi, kombucha, and sauerkraut.

Once you’ve eaten these foods, the probiotic bugs may set up home in your gut, increasing the diversity of beneficial bacteria and the health of your gut microbiome.

ZOE scientific co-founder and world-renowned microbiome expert Professor Tim Spector recommends eating “a small shot of fermented foods daily” to give them the best chance of sticking around.

Eat more plants

Eating plenty of plants is also important for your gut health. Many plant foods, such as onions, leeks, asparagus, garlic, and whole grains contain prebiotics, a type of fiber that feeds the “good” bacteria in your gut and helps them to thrive.

Regularly eating plants rich in fiber and high-quality protein — for example, lentils, beans, nuts, and quinoa — can also help you feel fuller for longer.

Eat fewer processed foods

Eating lots of ultra-processed foods, with added sugar, fat, salt, and artificial ingredients, is linked to health conditions like heart disease and type 2 diabetes. And it’s not good for your gut microbiome, either.

Ultra-processed foods like sugary sodas, candy, cookies, breakfast cereals, hot dogs, and pre-made pizzas don’t provide your gut bugs with the fiber and other nutrients they need.

Our research also shows that they are linked to “bad” gut microbes that are associated with worse health outcomes.

Eat for your unique gut microbiome

ZOE runs the largest nutrition and gut microbiome study in the world, with over 15,000 participants so far.

Our research shows that how your body and your gut microbes respond to the foods you eat is unique to you.

The ZOE at-home test uses the latest science to analyze your blood sugar and blood fat responses to hundreds of foods. You’ll also discover which of the 15 “good” and 15 “bad” gut bugs that we’ve identified live in your gut.

Using the ZOE program, you can find the best foods for your gut health and overall health, including your personal “gut booster” foods.

Summary

Intermittent fasting is an eating pattern that involves periods of the day where you don’t eat — or days where you significantly reduce your food intake — alternating with periods where you eat as normal.

Initial evidence suggests that intermittent fasting may benefit your gut health, particularly by increasing the diversity of your gut microbiome and the “good” gut bugs that make their home there.

Certain foods may improve your gut health while intermittent fasting, as well as help support you during fasting periods. These include fermented foods containing probiotics, as well as plant foods and whole grains — especially those with prebiotics that provide fuel for your gut bugs.

However, ZOE’s research shows that everyone responds differently to foods and that your gut microbiome is unique to you.

ZOE’s at-home test can help you discover which foods are best for you and your gut health.

You can take a free quiz to find out more.

Sources

Chronic inflammation. StatPearls. (2021). https://www.ncbi.nlm.nih.gov/books/NBK493173/

Dietary protein — its role in satiety, energetics, weight loss and health. British Journal of Nutrition. (2012). https://pubmed.ncbi.nlm.nih.gov/23107521/

Effect of time-restricted feeding on metabolic risk and circadian rhythm associated with gut microbiome in healthy males. British Journal of Nutrition. (2020). https://www.cambridge.org/core/journals/british-journal-of-nutrition/article/effect-of-timerestricted-feeding-on-metabolic-risk-and-circadian-rhythm-associated-with-gut-microbiome-in-healthy-males/A8C3BF83CBE5BF9CAC65ED783FA0FFD2

Fiber. (n.d.). https://www.hsph.harvard.edu/nutritionsource/carbohydrates/fiber/

Metabolic effects of intermittent fasting. Annual Review of Nutrition. (2017). https://www.annualreviews.org/doi/full/10.1146/annurev-nutr-071816-064634

Remodeling of the gut microbiome during Ramadan-associated intermittent fasting. The American Journal of Clinical Nutrition. (2021). https://academic.oup.com/ajcn/article/113/5/1332/6195748

The role of the gut barrier function in health and disease. Gastroenterology Research. (2018). https://www.ncbi.nlm.nih.gov/labs/pmc/articles/PMC6089582/

Time-restricted eating to prevent and manage chronic metabolic diseases. Annual Review of Nutrition. (2019). https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6703924/

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Intermittent Fasting, Gut Health, and Your Microbiome (2024)

FAQs

Intermittent Fasting, Gut Health, and Your Microbiome? ›

Recent studies suggest that intermittent fasting can alter the composition of the human gut microbiome by increasing taxonomic diversity and promoting microbial remodeling.

Does intermittent fasting improve gut microbiome? ›

Evidence suggests that intermittent fasting may benefit your gut health and boost your gut microbiome, the trillions of bacteria and other microorganisms that live in your gut. Intermittent fasting is an approach to eating where you switch between periods of fasting and eating as normal.

How long does intermittent fasting take to heal gut? ›

If you're using intermittent fasting to improve your gut health and symptoms, you may notice benefits after just a few days. For weight loss and improved metabolic health, it could take a month.

What is the best intermittent fasting schedule for gut health? ›

To improve gut health, you should fast for at least 12 hours. My patients typically see the best gut improvements when they fast for 14 or 16 hours a day. There are also fasting plans where you fast for 1 day and then eat normally for 1-3 days.

What is a 3 day fast gut microbiome? ›

A 3-day gut reset is a short diet that aims to improve digestive health by increasing the amount of beneficial bacteria in a person's large intestine. Bacteria and other microorganisms in the large intestine help break down food. This, in turn, helps the body absorb nutrients and eliminate waste.

How long should I fast to cleanse my gut? ›

While a prolonged fast of 3–5 days aligns with the gut lining's turnover rate and facilitates cell regeneration, studies have shown that shorter fasts of around 16–24 hours can still yield positive changes in the gut microbiome, offering digestive benefits without the need for an extended fast.

What is a 24 hour gut reset? ›

24-hour fasting can combat inflammation in three key ways: Stimulating intestinal stem cells that heal intestinal permeability. Stimulating autophagy that removes and recycles damaged cells that cause inflammation. Reducing circulating monocytes (inflammatory white blood cells)

What happens after 1 month of intermittent fasting? ›

Within a month of consistent 16:8 intermittent fasting, you can expect to lose 2–5% of your body weight. A safe rate of weight loss will typically average out to about 1–2 pounds per week, so develop a routine for weighing yourself once a week. The best time to do this is in the morning after you've used the bathroom.

Can you reset your stomach by fasting? ›

Fasting can help reset your digestive system, but the duration of the fasting period may vary depending on your individual needs and goals. Generally a few hours to a few days of fasting is sufficient. When you fast you give your digestive system a break and help it reset.

Why am I not losing weight on 16:8 fasting? ›

If you've tried intermittent fasting but aren't losing weight, possible reasons why include overeating during your eating window and poor food choices. To help, you can try eating fewer calories, work on balancing your meals, or create a smaller or larger eating window.

How can you tell if your gut is healing? ›

How Can You Tell If You're Healing?
  1. Improved digestion, such as less diarrhea, gas, and bloating.
  2. Clearer and healthier skin.
  3. Improved mood.
  4. Boosted energy levels.
  5. Reduced joint and muscle pain.
Oct 13, 2023

What is the best food to break a fast for gut health? ›

Include healthy, nutrient-dense foods, such as:
  • Lean meats and poultry.
  • Fish.
  • Whole fruits and vegetables.
  • Complex carbohydrates and whole grains.
  • Legumes (such as beans, lentils, peanuts, and peas)
  • Nuts.
  • Seeds.
  • Healthy fats.
May 20, 2024

Can intermittent fasting heal a leaky gut? ›

The ability of intermittent fasting to lower inflammation has been proven (25). More recent research has shown that alternate-day fasting and time-restricted fasting methods appear to improve gut permeability. This means they make the gut less leaky.

What are the 3 gut purifying foods? ›

5 colon-cleansing foods
  • Broccoli. There are so many different ways to add broccoli to your diet. ...
  • Dark, leafy greens. Eating dark, leafy greens like spinach, kale, and chard is a great way to cleanse your colon. ...
  • Milk. You can use milk for more than just your morning cereal. ...
  • Raspberries. ...
  • Oatmeal.

What can I drink for gut microbiome? ›

12 Homemade Gut Health Drink Recipes That Can Contribute To A Healthy Gut.
  • Probiotic Berry Smoothie. Ingredients. ...
  • Ginger Turmeric Kombucha. Ingredients. ...
  • Fermented beet water (Beetroot Kanji) Ingredients. ...
  • Lemon Ginger Water Kefir. Ingredients. ...
  • Rice kanji. Ingredients. ...
  • Homemade buttermilk. Ingredients. ...
  • Peppermint Tea. ...
  • Turmeric Milk.
Mar 31, 2024

How do I know if my gut microbiome is unhealthy? ›

The following can be signs of a gut bacteria imbalance:
  • Autoimmune problems, such as thyroid issues, rheumatoid arthritis and type 1 diabetes.
  • Digestive issues, such as irritable bowel syndrome, constipation, diarrhea, heartburn or bloating.
  • Sleep issues.
  • Skin rashes and allergies.
  • Sugar cravings.

Does intermittent fasting heal leaky gut? ›

The ability of intermittent fasting to lower inflammation has been proven (25). More recent research has shown that alternate-day fasting and time-restricted fasting methods appear to improve gut permeability. This means they make the gut less leaky.

How long does it take for diet to change gut microbiome? ›

Similarly, the Mediterranean diet causes a higher ratio of Bacteroidetes to Firmicutes, and high consumption of animal protein, saturated fats, and sugars affect gut microbiota diversity. Changing diet has been shown to alter the gut microbiome within 24 hours.

Does a 72 hour fast heal your gut? ›

Fasting is one of the most effective ways to reset your gut health, to heal leaky gut and improve digestion. When given a break from digesting, the cells of your gut regenerate and produce a whole new lining within 3 days!

How does intermittent fasting affect your digestive system? ›

Digestive issues

During intermittent fasting, reducing the amount of food you eat may negatively affect your digestion, causing certain side effects. Plus, the changes in your diet that occur with intermittent fasting may cause bloating and diarrhea for some people.

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